Relevant Thesis-Based Degree Programs
- Vitiligo pathogenesis and therapeutic development
- Novel melanin synthesis inhibitors
- Macrophage modulation in skin health
A person with strong motivation to succeed, strong communication skills including reading and writing skills, strong independent problem solving skills, and good time management skills.
Complete these steps before you reach out to a faculty member!
- Familiarize yourself with program requirements. You want to learn as much as possible from the information available to you before you reach out to a faculty member. Be sure to visit the graduate degree program listing and program-specific websites.
- Check whether the program requires you to seek commitment from a supervisor prior to submitting an application. For some programs this is an essential step while others match successful applicants with faculty members within the first year of study. This is either indicated in the program profile under "Admission Information & Requirements" - "Prepare Application" - "Supervision" or on the program website.
- Identify specific faculty members who are conducting research in your specific area of interest.
- Establish that your research interests align with the faculty member’s research interests.
- Read up on the faculty members in the program and the research being conducted in the department.
- Familiarize yourself with their work, read their recent publications and past theses/dissertations that they supervised. Be certain that their research is indeed what you are hoping to study.
- Compose an error-free and grammatically correct email addressed to your specifically targeted faculty member, and remember to use their correct titles.
- Do not send non-specific, mass emails to everyone in the department hoping for a match.
- Address the faculty members by name. Your contact should be genuine rather than generic.
- Include a brief outline of your academic background, why you are interested in working with the faculty member, and what experience you could bring to the department. The supervision enquiry form guides you with targeted questions. Ensure to craft compelling answers to these questions.
- Highlight your achievements and why you are a top student. Faculty members receive dozens of requests from prospective students and you may have less than 30 seconds to pique someone’s interest.
- Demonstrate that you are familiar with their research:
- Convey the specific ways you are a good fit for the program.
- Convey the specific ways the program/lab/faculty member is a good fit for the research you are interested in/already conducting.
- Be enthusiastic, but don’t overdo it.
G+PS regularly provides virtual sessions that focus on admission requirements and procedures and tips how to improve your application.
ADVICE AND INSIGHTS FROM UBC FACULTY ON REACHING OUT TO SUPERVISORS
These videos contain some general advice from faculty across UBC on finding and reaching out to a potential thesis supervisor.
Graduate Student Supervision
Doctoral Student Supervision
Dissertations completed in 2010 or later are listed below. Please note that there is a 6-12 month delay to add the latest dissertations.
Cutaneous T-cell lymphoma (CTCL) is a group of lymphoproliferative disorders consisting of two main subtypes: mycosis fungoides (MF) and Sézary syndrome (SS). Due to the lack of robust histological markers, it remains a challenge to establish an accurate diagnosis and offer long term prognostication for CTCL. In addition, the molecular pathogenesis of CTCL is only partially understood. Previously our group discovered that early stage MF skin biopsies contained ectopic expression of TOX gene, which is essential for the early development of CD4⁺ T cells but normally is switched off in mature CD4⁺ T cells in the peripheral tissues. The objectives of my thesis research are to evaluate if TOX can be used to improve CTCL diagnosis and prognostication, and to characterize the functional role of TOX in the pathogenesis of CTCL.Using skin biopsies and clinical databases from Vancouver, Beijing and Boston, I confirmed that TOX expression levels were significantly upregulated in the full spectrum of MF and in SS. In addition, as a diagnostic marker, high TOX expression levels differentiated CTCL from non-CTCL controls with good sensitivity and specificity. Furthermore, as a prognostic marker, high TOX mRNA levels correlated with increased risks of disease progression and disease-specific mortality in MF, and increased risks of disease-specific mortality in SS.I also investigated the functional role of TOX in CTCL pathogenesis using multiple CTCL cell lines and a mouse xenograft model. TOX knockdown in three CTCL cell lines led to markedly increased apoptosis, reduced cell proliferation, and impaired tumorigenic ability. These effects were partially mediated by increased expression of two cell cycle regulators, CDKN1B and CDKN1C. In addition, transcriptome analysis between TOX-suppressed cells and control CTCL cells uncovered additional potential molecules downstream of TOX, such as tumor suppressors FOXO3 and HBP1.Our results provide strong evidence that aberrant activation of TOX can serve as a diagnostic and prognostic biomarker for CTCL. Further, we demonstrated that TOX plays a crucial oncogenic role in CTCL pathogenesis, partially through regulating transcription of CDKN1B, CDKN1C and other downstream genes. Therefore TOX and/or its downstream genes may be promising therapeutic targets for CTCL.
Cancer therapy recently experienced remarkable advances with better understanding of cancer pathogenesis and introduction of new intervention strategies. Biomarkers reflective of the presence of tumor cells, or linked with clinical outcomes, have potential to improve the management of cancers. The purpose of this thesis study is to identify novel biomarkers of human cancers based on tissue microarray (TMA) technology and to determine their value for clinical application in cancer management using melanoma as the model. Melanoma arises from uncontrolled proliferation of melanocytes. Although melanoma accounts for only 4% of all skin cancer, it is responsible for 80% of deaths related to skin malignancies. To discover novel biomarkers of melanoma, we constructed a TMA using biopsies from 707 patients with various stages of melanocytic lesions. Using immunohistochemistry and TMA, multiple biomarker candidates were evaluated, and many were found to have significant prognostic value, including expression loss of Fbw7. To further improve the clinical value of these markers, various combinations of individual markers were evaluated, leading to the identification of KAI1 and p27 that together showed much stronger prognostic value than when used as individual markers. Moreover, since there has been a dearth of reliable prognostic markers to offer prognostic information on specific melanoma stages, we identified the AJCC-stage specific prognostic markers, including BRAF protein expression as a prognostic marker for thin melanomas. In that significant prognostic value was found for Fbw7 protein in melanoma, we performed in vitro experiments on this protein in detail. Our data showed that the alpha isoform of Fbw7, located in the cell nucleus, was the dominant form expressed in melanoma. Knock-down of Fbw7α promoted melanoma cell migration, and the MAPK signaling pathway was required for Fbw7 function in melanoma. These findings indicate loss of Fbw7 to be an independent melanoma prognostic marker, and important for the development of malignant behaviors of melanoma cells. This study has demonstrated that the combination of TMAs of cancers with the corresponding clinical database represents a powerful technological platform for biomarker discovery. TMA/clinical database combination-based investigations should be applicable for the investigation of other types of human cancers as well.
Master's Student Supervision
Theses completed in 2010 or later are listed below. Please note that there is a 6-12 month delay to add the latest theses.
This study focuses on melanoma, a cancer of pigment-producing cells within the skin(melanocytes) which insidiously spreads (metastasizes) throughout the body. Thisdevastating disease often prevents patients from living beyond five years from diagnosis.Treatment options for melanoma are inept, which has necessitated a demand for research onthe molecular mechanisms of melanoma to aid in the development of novel therapeutictargets and treatments.The gene Sineoculis homeobox homolog 1 (SIX1) encodes for a homeoproteintranscription factor which is an important developmental regulator during embryogenesis. Apreliminary microarray analysis found that SIX1 was upregulated in melanoma. The purposeof this study was to pioneer the assessment of SIX1 in melanoma, including its role in themetastatic functions of melanoma in vitro as well as its clinical relevance. The specific aimsincluded: (1) to assess SIX1 expression in melanoma cell lines and clinical samples; (2) toinvestigate the functional significance and pathogenic role of Six1 in vitro; and (3) toevaluate Six1’s clinical significance in relation to prognosis and clinicopathologicalcharacteristics.Cell lines and clinical samples were tested for SIX1 transcript level using qPCR andprotein level using Western Blotting. Next, two malignant melanoma cell lines weretransfected with shRNA plasmids to generate stable clones with low Six1 expression. Thesealtered cell lines were used to study the functional implications of Six1 expression disparitiesin vitro. Furthermore, immunohistochemistry against Six1 was performed on a tissuemicroarray of 438 melanoma patient biopsies.We discovered that SIX1 was overexpressed in melanoma cell lines and clinicalsamples. Six1 knockdown cells demonstrated diminished cell growth and proliferation,increased apoptosis, and decreased migration and invasion. We also found that a profoundnuclear to cytoplasmic shift of Six1 accompanied melanoma progression and correlated withpoor five-year survival. Higher cytoplasmic Six1 was associated with increased tumorthickness, lower nuclear Six1 with ulceration and histological satellitosis, and both withadvanced AJCC stages and nodular melanoma.To summarize, these results hint that Six1 may play a role in the execution ofmetastatic functions in melanoma. Furthermore, Six1 presents as a tentative candidate for aprognostic marker in patient biopsies.
Background: Melanoma is a devastating cancer with 17% 5-year survival rate when it is metastasized. Clinically, finding new biomarkers will provide more options in patient early diagnosis and treatments. Previously, Lysyl Oxidase-like 3 (LOXL3) was discovered as one of the most upregulated genes in metastatic melanoma compared to normal nevi and normal skin. LOXL3 is an extracellular protein that induces the cross-linkage formation in collagen and elastin. LOXL3 has never reported in melanoma and barely been studied in tumours. The previous knowledge about LOXL3 makes it an attractive gene to study in melanoma.Objective: The objectives of this study are to investigate LOXL3 expression profile, bio-functions, clinical significance, and potential downstream regulators in melanoma.Experimental Methods: A panel of cell lines and tissues was utilized to evaluate LOXL3 expression in mRNA and protein levels. Two melanoma cell lines, A375 and WM-115, were transfected with siRNAs to create transiently-decreased LOXL3 expression, to study the functional differences of LOXL3 in vitro. Further, immunohistochemical staining of tissue microarray with 373 biopsies was used to observe the correlation between LOXL3 expression levels and patient survival outcomes. Results: We detected a significantly higher expression of LOXL3 on mRNA and protein levels in melanoma compared to melanocytes and normal skins. LOXL3 deficiency could inhibit proliferation, migration and invasion in vitro. Tissue microarray revealed that higher LOXL3 cytoplasmic staining was associated with thicker tumour, the presence of mitosis, more advanced melanoma, and worse primary melanoma patient survival. LOXL3 knockdown did not induce any differences in FAK/Src phosphorylation levels or E-cadherin expression levels.Discussion: LOXL3 promotes cell proliferation, cell motility and cell invasion in vitro, and LOXL3 cytoplasmic overexpression is associated with enhanced tumour mitosis and thickness in melanoma in vivo. This suggests LOXL3 has an essential impact on melanoma growth and potentially metastasis due to the invasive potential. In addition, no correlations are found in FAK/Src activation and E-cadherin restoration by LOXL3, suggesting LOXL3 may use a different pathway beyond previous knowledge.Conclusion: LOXL3 positively regulates cellular growth and invasion in melanoma cells and tissues, making LOXL3 a promising prognostic marker and a therapeutic target.
Background: Hyperhidrosis (HH) is a disorder in which patient suffers from excessive sweating without any known etiology such as the rise in temperature. Although there have been some epidemiological studies on hyperhidrosis, questions still remain regarding the prevalence of hyperhidrosis and associated demographical, ethnic or geographical factors. Similarly, the association of hyperhidrosis with anxiety and depression has not been systematically investigated. Finally, the relationship between daytime hyperhidrosis and nighttime sweating has not been examined. Methods: One thousand and ten consecutive subjects attending dermatology outpatient clinics in Shanghai Skin Disease Hospital and 1017 subjects in Skin Care Center of Vancouver General Hospital were investigated for this case-control, cross-sectional study after filling out a questionnaire on their presenting concerns, demographical information and mental stress and sweating symptoms. The subjects were then classified to have primary HH subtypes using the criteria of International Hyperhidrosis Society, late onset hyperhidrosis, or no-HH. Then the prevalence of HH and its correlation with anxiety, depression and NS was examined in both single variants and multivariate logistic regression analyses, stratified according to age at examination, sex, ethnicity, presenting diagnosis, BMI, and specific study cities. Results: The prevalence of total HH is very similar in Shanghai and Vancouver (about 18%). Primary HH subtypes have the highest prevalence in those younger than 30 years old, decreasing dramatically in later years. Caucasian subjects are more likely to develop axillary hyperhidrosis compared to Chinese subjects. The prevalence of anxiety and depression was 21.3% and 27.2% in hyperhidrosis patients, respectively, and 7.5% and 9.7% in patients without hyperhidrosis. Among the effects of ethnicity, mental stress symptoms and HH, which are correlated with NS, HH is the most associated factor with NS as more than half of the patients with HH suffer from NS.Conclusion: Prevalence of total HH is similar in different geographical locations.However, certain specific HH subtypes can show great variations according to ethnicity, age, body mass index and sex and based on the severity of sweating. Similar to NS, both anxiety and depression were more prevalent in patients with HH, than those without HH.
Background: Vitiligo is a complex autoimmune skin condition characterized by the death of melanocytes, the principle pigment producing cells in the skin. Transcriptome analysis of vitiligo skin revealed significantly reduced levels of proteolipid 1 (PLP1) gene, which is known to be expressed by Schwann cells, as well as significantly up-regulation of genes that are associated with natural killer (NK) cell activity.Hypothesis and Objectives: Schwann cells may be adversely affected in vitiligo and NK cells may potentially play a role in the overall disease pathogenesis. Therefore, the purpose of this study is to characterize the down-regulation of PLP1 and assess the presence of NK cell infiltration in vitiligo skin biopsies.Materials and Methods: PLP1 expression analyses were performed on major types of skin cells as well as vitiligo and normal skin samples. Quantification of Schwann cells was performed on paired vitiligo samples using immunohistochemistry. Schwann cell conditioned medium was also tested for its ability to support the growth and survival of human melanocytes. To assess NK cell activity, explant skin cultures and immunofluorescence analyses were performed to localize activated NK cells in skin biopsies.Results: Schwann cells were the primary source of PLP1 in human skin, although it is also expressed by melanocytes. Schwann cells were found to be decreased in vitiligo lesional skin as compared to peri-lesional and normal skin. In addition, conditional medium prepared from cultured Schwann cells significantly increased the survival of human melanocytes. Furthermore, explant skin cultures and immunofluorescence studies revealed marked increase of NK cells with heightened activity in vitiligo lesional as well as peri-lesional vitiligo skin.Conclusion: Results from our study suggest that the loss of melanocytes and reduction in Schwann cells may account for the down-regulation of PLP1 in vitiligo lesional skin. In addition, Schwann cells may play a role in the growth and survival of melanocytes and their decrease may have facilitated the development of vitiligo. Furthermore, this study lends support to the direct involvement of NK cells in the pathogenesis of vitiligo and suggests that they should be explored as cellular targets for development of better therapies in the future.